Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4956 |
| Number of amino acids: | 497 |
| Molecular Weight: | 55495.02 Da |
| Theoretical pI: | 5.03 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 7.24% |
| Cysteine CYS (C) | 6 | 1.21% |
| Glutamic Acid GLU (E) | 24 | 4.83% |
| Aspartic Acid ASP (D) | 32 | 6.44% |
| Glycine GLY (G) | 37 | 7.44% |
| Phynylalanine PHE (F) | 30 | 6.04% |
| Isoleucine ILE (I) | 16 | 3.22% |
| Histidine HIS (H) | 10 | 2.01% |
| Lysine LYS (K) | 16 | 3.22% |
| Methionine MET (M) | 13 | 2.62% |
| Leucine LEU (L) | 44 | 8.85% |
| Asparagine ASN (N) | 32 | 6.44% |
| Glutamine GLN (Q) | 13 | 2.62% |
| Proline PRO (P) | 29 | 5.84% |
| Serine SER (S) | 50 | 10.06% |
| Arginine ARG (R) | 23 | 4.63% |
| Threonine THR (T) | 22 | 4.43% |
| Tryptophan TRP (W) | 8 | 1.61% |
| Valine VAL (V) | 29 | 5.84% |
| Tyrosine TYR (Y) | 27 | 5.43% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2489 |
| Hydrogen | H | 3723 |
| Nitrogen | N | 655 |
| Oxygen | O | 754 |
| Sulphur | S | 19 |
| Formula | C2489H3723N655O754S19 |
| Total Number of Atoms: | 7640 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 56 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 84605 Absorption 0.1% (=1 g/l) 1.525, assuming all pairs of CYS residues form cystines Ext. coefficient 84230 Absorption 0.1% (=1 g/l) 1.518, assuming all CYS residues are reduced |
| Aromaticity: | 0.131 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 44.87 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.99, 29.78, 23.54] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.2475 |
| Grand average of hydropathicity (GRAVY): | -0.32 |