Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4930 |
| Number of amino acids: | 358 |
| Molecular Weight: | 39541.68 Da |
| Theoretical pI: | 6.23 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 6.7% |
| Cysteine CYS (C) | 9 | 2.51% |
| Glutamic Acid GLU (E) | 23 | 6.42% |
| Aspartic Acid ASP (D) | 17 | 4.75% |
| Glycine GLY (G) | 34 | 9.5% |
| Phynylalanine PHE (F) | 19 | 5.31% |
| Isoleucine ILE (I) | 13 | 3.63% |
| Histidine HIS (H) | 10 | 2.79% |
| Lysine LYS (K) | 26 | 7.26% |
| Methionine MET (M) | 7 | 1.96% |
| Leucine LEU (L) | 28 | 7.82% |
| Asparagine ASN (N) | 18 | 5.03% |
| Glutamine GLN (Q) | 13 | 3.63% |
| Proline PRO (P) | 9 | 2.51% |
| Serine SER (S) | 30 | 8.38% |
| Arginine ARG (R) | 10 | 2.79% |
| Threonine THR (T) | 19 | 5.31% |
| Tryptophan TRP (W) | 6 | 1.68% |
| Valine VAL (V) | 29 | 8.1% |
| Tyrosine TYR (Y) | 14 | 3.91% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1763 |
| Hydrogen | H | 2707 |
| Nitrogen | N | 471 |
| Oxygen | O | 533 |
| Sulphur | S | 16 |
| Formula | C1763H2707N471O533S16 |
| Total Number of Atoms: | 5490 |
| Total number of positively charged residues (ARG + LYS): | 36 |
| Total number of negatively charged residues (ASP + GLU): | 40 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 54360 Absorption 0.1% (=1 g/l) 1.375, assuming all pairs of CYS residues form cystines Ext. coefficient 53860 Absorption 0.1% (=1 g/l) 1.362, assuming all CYS residues are reduced |
| Aromaticity: | 0.109 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 30.81 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.45, 25.42, 22.91] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.8603 |
| Grand average of hydropathicity (GRAVY): | -0.27 |