Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4926 |
| Number of amino acids: | 456 |
| Molecular Weight: | 49299.81 Da |
| Theoretical pI: | 5.36 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 5.7% |
| Cysteine CYS (C) | 14 | 3.07% |
| Glutamic Acid GLU (E) | 18 | 3.95% |
| Aspartic Acid ASP (D) | 26 | 5.7% |
| Glycine GLY (G) | 45 | 9.87% |
| Phynylalanine PHE (F) | 23 | 5.04% |
| Isoleucine ILE (I) | 35 | 7.68% |
| Histidine HIS (H) | 6 | 1.32% |
| Lysine LYS (K) | 20 | 4.39% |
| Methionine MET (M) | 11 | 2.41% |
| Leucine LEU (L) | 30 | 6.58% |
| Asparagine ASN (N) | 24 | 5.26% |
| Glutamine GLN (Q) | 24 | 5.26% |
| Proline PRO (P) | 15 | 3.29% |
| Serine SER (S) | 47 | 10.31% |
| Arginine ARG (R) | 16 | 3.51% |
| Threonine THR (T) | 30 | 6.58% |
| Tryptophan TRP (W) | 8 | 1.75% |
| Valine VAL (V) | 32 | 7.02% |
| Tyrosine TYR (Y) | 6 | 1.32% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2162 |
| Hydrogen | H | 3396 |
| Nitrogen | N | 592 |
| Oxygen | O | 676 |
| Sulphur | S | 25 |
| Formula | C2162H3396N592O676S25 |
| Total Number of Atoms: | 6851 |
| Total number of positively charged residues (ARG + LYS): | 36 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 53815 Absorption 0.1% (=1 g/l) 1.092, assuming all pairs of CYS residues form cystines Ext. coefficient 52940 Absorption 0.1% (=1 g/l) 1.074, assuming all CYS residues are reduced |
| Aromaticity: | 0.081 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.64 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.39, 28.73, 18.64] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.6447 |
| Grand average of hydropathicity (GRAVY): | -0.07 |