Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4910 |
| Number of amino acids: | 501 |
| Molecular Weight: | 53928.99 Da |
| Theoretical pI: | 6 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 4.19% |
| Cysteine CYS (C) | 10 | 2% |
| Glutamic Acid GLU (E) | 12 | 2.4% |
| Aspartic Acid ASP (D) | 34 | 6.79% |
| Glycine GLY (G) | 56 | 11.18% |
| Phynylalanine PHE (F) | 18 | 3.59% |
| Isoleucine ILE (I) | 27 | 5.39% |
| Histidine HIS (H) | 15 | 2.99% |
| Lysine LYS (K) | 14 | 2.79% |
| Methionine MET (M) | 15 | 2.99% |
| Leucine LEU (L) | 41 | 8.18% |
| Asparagine ASN (N) | 29 | 5.79% |
| Glutamine GLN (Q) | 17 | 3.39% |
| Proline PRO (P) | 21 | 4.19% |
| Serine SER (S) | 72 | 14.37% |
| Arginine ARG (R) | 24 | 4.79% |
| Threonine THR (T) | 29 | 5.79% |
| Tryptophan TRP (W) | 8 | 1.6% |
| Valine VAL (V) | 25 | 4.99% |
| Tyrosine TYR (Y) | 13 | 2.59% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2332 |
| Hydrogen | H | 3627 |
| Nitrogen | N | 671 |
| Oxygen | O | 754 |
| Sulphur | S | 25 |
| Formula | C2332H3627N671O754S25 |
| Total Number of Atoms: | 7409 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 46 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63995 Absorption 0.1% (=1 g/l) 1.187, assuming all pairs of CYS residues form cystines Ext. coefficient 63370 Absorption 0.1% (=1 g/l) 1.175, assuming all CYS residues are reduced |
| Aromaticity: | 0.078 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 42.73 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.35, 35.53, 17.76] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.5968 |
| Grand average of hydropathicity (GRAVY): | -0.33 |