Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4902 |
| Number of amino acids: | 424 |
| Molecular Weight: | 47088.36 Da |
| Theoretical pI: | 5.52 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 12 | 2.83% |
| Cysteine CYS (C) | 10 | 2.36% |
| Glutamic Acid GLU (E) | 30 | 7.08% |
| Aspartic Acid ASP (D) | 14 | 3.3% |
| Glycine GLY (G) | 34 | 8.02% |
| Phynylalanine PHE (F) | 23 | 5.42% |
| Isoleucine ILE (I) | 16 | 3.77% |
| Histidine HIS (H) | 3 | 0.71% |
| Lysine LYS (K) | 23 | 5.42% |
| Methionine MET (M) | 11 | 2.59% |
| Leucine LEU (L) | 77 | 18.16% |
| Asparagine ASN (N) | 36 | 8.49% |
| Glutamine GLN (Q) | 7 | 1.65% |
| Proline PRO (P) | 22 | 5.19% |
| Serine SER (S) | 43 | 10.14% |
| Arginine ARG (R) | 16 | 3.77% |
| Threonine THR (T) | 18 | 4.25% |
| Tryptophan TRP (W) | 6 | 1.42% |
| Valine VAL (V) | 16 | 3.77% |
| Tyrosine TYR (Y) | 7 | 1.65% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2111 |
| Hydrogen | H | 3346 |
| Nitrogen | N | 550 |
| Oxygen | O | 624 |
| Sulphur | S | 21 |
| Formula | C2111H3346N550O624S21 |
| Total Number of Atoms: | 6652 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 44055 Absorption 0.1% (=1 g/l) 0.936, assuming all pairs of CYS residues form cystines Ext. coefficient 43430 Absorption 0.1% (=1 g/l) 0.922, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.93 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.20, 31.84, 30.66] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 99.3161 |
| Grand average of hydropathicity (GRAVY): | -0.05 |