Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4900 |
| Number of amino acids: | 347 |
| Molecular Weight: | 38035.38 Da |
| Theoretical pI: | 8.71 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 7.2% |
| Cysteine CYS (C) | 8 | 2.31% |
| Glutamic Acid GLU (E) | 6 | 1.73% |
| Aspartic Acid ASP (D) | 30 | 8.65% |
| Glycine GLY (G) | 21 | 6.05% |
| Phynylalanine PHE (F) | 20 | 5.76% |
| Isoleucine ILE (I) | 16 | 4.61% |
| Histidine HIS (H) | 5 | 1.44% |
| Lysine LYS (K) | 22 | 6.34% |
| Methionine MET (M) | 7 | 2.02% |
| Leucine LEU (L) | 38 | 10.95% |
| Asparagine ASN (N) | 20 | 5.76% |
| Glutamine GLN (Q) | 11 | 3.17% |
| Proline PRO (P) | 17 | 4.9% |
| Serine SER (S) | 36 | 10.37% |
| Arginine ARG (R) | 19 | 5.48% |
| Threonine THR (T) | 18 | 5.19% |
| Tryptophan TRP (W) | 1 | 0.29% |
| Valine VAL (V) | 21 | 6.05% |
| Tyrosine TYR (Y) | 6 | 1.73% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1676 |
| Hydrogen | H | 2672 |
| Nitrogen | N | 468 |
| Oxygen | O | 511 |
| Sulphur | S | 15 |
| Formula | C1676H2672N468O511S15 |
| Total Number of Atoms: | 5342 |
| Total number of positively charged residues (ARG + LYS): | 41 |
| Total number of negatively charged residues (ASP + GLU): | 36 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 14940 Absorption 0.1% (=1 g/l) 0.393, assuming all pairs of CYS residues form cystines Ext. coefficient 14440 Absorption 0.1% (=1 g/l) 0.380, assuming all CYS residues are reduced |
| Aromaticity: | 0.078 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.96 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.39, 27.09, 21.90] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 85.4466 |
| Grand average of hydropathicity (GRAVY): | -0.20 |