Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4899 |
| Number of amino acids: | 330 |
| Molecular Weight: | 35556.42 Da |
| Theoretical pI: | 8.86 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 8.18% |
| Cysteine CYS (C) | 9 | 2.73% |
| Glutamic Acid GLU (E) | 8 | 2.42% |
| Aspartic Acid ASP (D) | 19 | 5.76% |
| Glycine GLY (G) | 31 | 9.39% |
| Phynylalanine PHE (F) | 22 | 6.67% |
| Isoleucine ILE (I) | 15 | 4.55% |
| Histidine HIS (H) | 5 | 1.52% |
| Lysine LYS (K) | 14 | 4.24% |
| Methionine MET (M) | 5 | 1.52% |
| Leucine LEU (L) | 28 | 8.48% |
| Asparagine ASN (N) | 18 | 5.45% |
| Glutamine GLN (Q) | 15 | 4.55% |
| Proline PRO (P) | 11 | 3.33% |
| Serine SER (S) | 29 | 8.79% |
| Arginine ARG (R) | 19 | 5.76% |
| Threonine THR (T) | 22 | 6.67% |
| Tryptophan TRP (W) | 2 | 0.61% |
| Valine VAL (V) | 27 | 8.18% |
| Tyrosine TYR (Y) | 4 | 1.21% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1565 |
| Hydrogen | H | 2476 |
| Nitrogen | N | 446 |
| Oxygen | O | 473 |
| Sulphur | S | 14 |
| Formula | C1565H2476N446O473S14 |
| Total Number of Atoms: | 4974 |
| Total number of positively charged residues (ARG + LYS): | 33 |
| Total number of negatively charged residues (ASP + GLU): | 27 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 17460 Absorption 0.1% (=1 g/l) 0.491, assuming all pairs of CYS residues form cystines Ext. coefficient 16960 Absorption 0.1% (=1 g/l) 0.477, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.37 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.70, 26.97, 20.61] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.7273 |
| Grand average of hydropathicity (GRAVY): | -0.04 |