Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4898 |
| Number of amino acids: | 469 |
| Molecular Weight: | 53830.45 Da |
| Theoretical pI: | 6.19 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 4.9% |
| Cysteine CYS (C) | 18 | 3.84% |
| Glutamic Acid GLU (E) | 30 | 6.4% |
| Aspartic Acid ASP (D) | 32 | 6.82% |
| Glycine GLY (G) | 25 | 5.33% |
| Phynylalanine PHE (F) | 17 | 3.62% |
| Isoleucine ILE (I) | 18 | 3.84% |
| Histidine HIS (H) | 6 | 1.28% |
| Lysine LYS (K) | 32 | 6.82% |
| Methionine MET (M) | 11 | 2.35% |
| Leucine LEU (L) | 47 | 10.02% |
| Asparagine ASN (N) | 21 | 4.48% |
| Glutamine GLN (Q) | 24 | 5.12% |
| Proline PRO (P) | 24 | 5.12% |
| Serine SER (S) | 32 | 6.82% |
| Arginine ARG (R) | 27 | 5.76% |
| Threonine THR (T) | 23 | 4.9% |
| Tryptophan TRP (W) | 12 | 2.56% |
| Valine VAL (V) | 30 | 6.4% |
| Tyrosine TYR (Y) | 17 | 3.62% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2386 |
| Hydrogen | H | 3719 |
| Nitrogen | N | 651 |
| Oxygen | O | 711 |
| Sulphur | S | 29 |
| Formula | C2386H3719N651O711S29 |
| Total Number of Atoms: | 7496 |
| Total number of positively charged residues (ARG + LYS): | 59 |
| Total number of negatively charged residues (ASP + GLU): | 62 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 92455 Absorption 0.1% (=1 g/l) 1.718, assuming all pairs of CYS residues form cystines Ext. coefficient 91330 Absorption 0.1% (=1 g/l) 1.697, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 51.42 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.06, 21.75, 23.67] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 77.5052 |
| Grand average of hydropathicity (GRAVY): | -0.47 |