Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4884 |
| Number of amino acids: | 119 |
| Molecular Weight: | 13160.31 Da |
| Theoretical pI: | 5.33 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 6 | 5.04% |
| Cysteine CYS (C) | 3 | 2.52% |
| Glutamic Acid GLU (E) | 8 | 6.72% |
| Aspartic Acid ASP (D) | 5 | 4.2% |
| Glycine GLY (G) | 5 | 4.2% |
| Phynylalanine PHE (F) | 6 | 5.04% |
| Isoleucine ILE (I) | 6 | 5.04% |
| Histidine HIS (H) | 1 | 0.84% |
| Lysine LYS (K) | 8 | 6.72% |
| Methionine MET (M) | 2 | 1.68% |
| Leucine LEU (L) | 16 | 13.45% |
| Asparagine ASN (N) | 7 | 5.88% |
| Glutamine GLN (Q) | 7 | 5.88% |
| Proline PRO (P) | 5 | 4.2% |
| Serine SER (S) | 9 | 7.56% |
| Arginine ARG (R) | 3 | 2.52% |
| Threonine THR (T) | 7 | 5.88% |
| Tryptophan TRP (W) | 1 | 0.84% |
| Valine VAL (V) | 14 | 11.76% |
| Tyrosine TYR (Y) | 0 | 0% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 589 |
| Hydrogen | H | 959 |
| Nitrogen | N | 153 |
| Oxygen | O | 176 |
| Sulphur | S | 5 |
| Formula | C589H959N153O176S5 |
| Total Number of Atoms: | 1882 |
| Total number of positively charged residues (ARG + LYS): | 11 |
| Total number of negatively charged residues (ASP + GLU): | 13 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 5625 Absorption 0.1% (=1 g/l) 0.427, assuming all pairs of CYS residues form cystines Ext. coefficient 5500 Absorption 0.1% (=1 g/l) 0.418, assuming all CYS residues are reduced |
| Aromaticity: | 0.059 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 41.08 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [36.13, 21.85, 26.89] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 111.261 |
| Grand average of hydropathicity (GRAVY): | 0.17 |