Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4882 |
| Number of amino acids: | 493 |
| Molecular Weight: | 55136.79 Da |
| Theoretical pI: | 6.24 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 6.09% |
| Cysteine CYS (C) | 10 | 2.03% |
| Glutamic Acid GLU (E) | 31 | 6.29% |
| Aspartic Acid ASP (D) | 23 | 4.67% |
| Glycine GLY (G) | 42 | 8.52% |
| Phynylalanine PHE (F) | 12 | 2.43% |
| Isoleucine ILE (I) | 20 | 4.06% |
| Histidine HIS (H) | 18 | 3.65% |
| Lysine LYS (K) | 31 | 6.29% |
| Methionine MET (M) | 21 | 4.26% |
| Leucine LEU (L) | 35 | 7.1% |
| Asparagine ASN (N) | 24 | 4.87% |
| Glutamine GLN (Q) | 17 | 3.45% |
| Proline PRO (P) | 25 | 5.07% |
| Serine SER (S) | 35 | 7.1% |
| Arginine ARG (R) | 16 | 3.25% |
| Threonine THR (T) | 22 | 4.46% |
| Tryptophan TRP (W) | 9 | 1.83% |
| Valine VAL (V) | 44 | 8.92% |
| Tyrosine TYR (Y) | 28 | 5.68% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2454 |
| Hydrogen | H | 3774 |
| Nitrogen | N | 658 |
| Oxygen | O | 728 |
| Sulphur | S | 31 |
| Formula | C2454H3774N658O728S31 |
| Total Number of Atoms: | 7645 |
| Total number of positively charged residues (ARG + LYS): | 47 |
| Total number of negatively charged residues (ASP + GLU): | 54 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 91845 Absorption 0.1% (=1 g/l) 1.666, assuming all pairs of CYS residues form cystines Ext. coefficient 91220 Absorption 0.1% (=1 g/l) 1.654, assuming all CYS residues are reduced |
| Aromaticity: | 0.099 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.20 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.02, 25.56, 23.73] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 75.4767 |
| Grand average of hydropathicity (GRAVY): | -0.34 |