Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4880 |
| Number of amino acids: | 346 |
| Molecular Weight: | 38228.24 Da |
| Theoretical pI: | 9.28 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 6.07% |
| Cysteine CYS (C) | 8 | 2.31% |
| Glutamic Acid GLU (E) | 17 | 4.91% |
| Aspartic Acid ASP (D) | 19 | 5.49% |
| Glycine GLY (G) | 27 | 7.8% |
| Phynylalanine PHE (F) | 21 | 6.07% |
| Isoleucine ILE (I) | 19 | 5.49% |
| Histidine HIS (H) | 8 | 2.31% |
| Lysine LYS (K) | 28 | 8.09% |
| Methionine MET (M) | 6 | 1.73% |
| Leucine LEU (L) | 37 | 10.69% |
| Asparagine ASN (N) | 7 | 2.02% |
| Glutamine GLN (Q) | 8 | 2.31% |
| Proline PRO (P) | 21 | 6.07% |
| Serine SER (S) | 32 | 9.25% |
| Arginine ARG (R) | 20 | 5.78% |
| Threonine THR (T) | 19 | 5.49% |
| Tryptophan TRP (W) | 1 | 0.29% |
| Valine VAL (V) | 19 | 5.49% |
| Tyrosine TYR (Y) | 8 | 2.31% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1716 |
| Hydrogen | H | 2732 |
| Nitrogen | N | 466 |
| Oxygen | O | 493 |
| Sulphur | S | 14 |
| Formula | C1716H2732N466O493S14 |
| Total Number of Atoms: | 5421 |
| Total number of positively charged residues (ARG + LYS): | 48 |
| Total number of negatively charged residues (ASP + GLU): | 36 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 17920 Absorption 0.1% (=1 g/l) 0.469, assuming all pairs of CYS residues form cystines Ext. coefficient 17420 Absorption 0.1% (=1 g/l) 0.456, assuming all CYS residues are reduced |
| Aromaticity: | 0.087 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 41.29 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.35, 25.14, 23.41] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 85.1154 |
| Grand average of hydropathicity (GRAVY): | -0.18 |