Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4859 |
| Number of amino acids: | 478 |
| Molecular Weight: | 52670.35 Da |
| Theoretical pI: | 5.25 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 6.9% |
| Cysteine CYS (C) | 8 | 1.67% |
| Glutamic Acid GLU (E) | 33 | 6.9% |
| Aspartic Acid ASP (D) | 28 | 5.86% |
| Glycine GLY (G) | 40 | 8.37% |
| Phynylalanine PHE (F) | 17 | 3.56% |
| Isoleucine ILE (I) | 20 | 4.18% |
| Histidine HIS (H) | 14 | 2.93% |
| Lysine LYS (K) | 28 | 5.86% |
| Methionine MET (M) | 11 | 2.3% |
| Leucine LEU (L) | 44 | 9.21% |
| Asparagine ASN (N) | 27 | 5.65% |
| Glutamine GLN (Q) | 12 | 2.51% |
| Proline PRO (P) | 24 | 5.02% |
| Serine SER (S) | 41 | 8.58% |
| Arginine ARG (R) | 15 | 3.14% |
| Threonine THR (T) | 20 | 4.18% |
| Tryptophan TRP (W) | 7 | 1.46% |
| Valine VAL (V) | 36 | 7.53% |
| Tyrosine TYR (Y) | 20 | 4.18% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2342 |
| Hydrogen | H | 3613 |
| Nitrogen | N | 625 |
| Oxygen | O | 721 |
| Sulphur | S | 19 |
| Formula | C2342H3613N625O721S19 |
| Total Number of Atoms: | 7320 |
| Total number of positively charged residues (ARG + LYS): | 43 |
| Total number of negatively charged residues (ASP + GLU): | 61 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 68800 Absorption 0.1% (=1 g/l) 1.306, assuming all pairs of CYS residues form cystines Ext. coefficient 68300 Absorption 0.1% (=1 g/l) 1.297, assuming all CYS residues are reduced |
| Aromaticity: | 0.092 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.93 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.13, 27.62, 25.31] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.9623 |
| Grand average of hydropathicity (GRAVY): | -0.31 |