Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4825 |
| Number of amino acids: | 516 |
| Molecular Weight: | 57301.24 Da |
| Theoretical pI: | 9.1 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 49 | 9.5% |
| Cysteine CYS (C) | 8 | 1.55% |
| Glutamic Acid GLU (E) | 12 | 2.33% |
| Aspartic Acid ASP (D) | 28 | 5.43% |
| Glycine GLY (G) | 38 | 7.36% |
| Phynylalanine PHE (F) | 29 | 5.62% |
| Isoleucine ILE (I) | 22 | 4.26% |
| Histidine HIS (H) | 18 | 3.49% |
| Lysine LYS (K) | 30 | 5.81% |
| Methionine MET (M) | 11 | 2.13% |
| Leucine LEU (L) | 47 | 9.11% |
| Asparagine ASN (N) | 21 | 4.07% |
| Glutamine GLN (Q) | 18 | 3.49% |
| Proline PRO (P) | 24 | 4.65% |
| Serine SER (S) | 47 | 9.11% |
| Arginine ARG (R) | 22 | 4.26% |
| Threonine THR (T) | 27 | 5.23% |
| Tryptophan TRP (W) | 7 | 1.36% |
| Valine VAL (V) | 29 | 5.62% |
| Tyrosine TYR (Y) | 29 | 5.62% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2595 |
| Hydrogen | H | 3948 |
| Nitrogen | N | 694 |
| Oxygen | O | 739 |
| Sulphur | S | 19 |
| Formula | C2595H3948N694O739S19 |
| Total Number of Atoms: | 7995 |
| Total number of positively charged residues (ARG + LYS): | 52 |
| Total number of negatively charged residues (ASP + GLU): | 40 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 82210 Absorption 0.1% (=1 g/l) 1.435, assuming all pairs of CYS residues form cystines Ext. coefficient 81710 Absorption 0.1% (=1 g/l) 1.426, assuming all CYS residues are reduced |
| Aromaticity: | 0.126 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.94 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.59, 25.19, 23.06] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 77.9458 |
| Grand average of hydropathicity (GRAVY): | -0.18 |