Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4815 |
| Number of amino acids: | 508 |
| Molecular Weight: | 56362.09 Da |
| Theoretical pI: | 5.85 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 45 | 8.86% |
| Cysteine CYS (C) | 10 | 1.97% |
| Glutamic Acid GLU (E) | 30 | 5.91% |
| Aspartic Acid ASP (D) | 29 | 5.71% |
| Glycine GLY (G) | 43 | 8.46% |
| Phynylalanine PHE (F) | 30 | 5.91% |
| Isoleucine ILE (I) | 24 | 4.72% |
| Histidine HIS (H) | 13 | 2.56% |
| Lysine LYS (K) | 29 | 5.71% |
| Methionine MET (M) | 14 | 2.76% |
| Leucine LEU (L) | 46 | 9.06% |
| Asparagine ASN (N) | 26 | 5.12% |
| Glutamine GLN (Q) | 13 | 2.56% |
| Proline PRO (P) | 22 | 4.33% |
| Serine SER (S) | 34 | 6.69% |
| Arginine ARG (R) | 21 | 4.13% |
| Threonine THR (T) | 23 | 4.53% |
| Tryptophan TRP (W) | 7 | 1.38% |
| Valine VAL (V) | 29 | 5.71% |
| Tyrosine TYR (Y) | 20 | 3.94% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2530 |
| Hydrogen | H | 3874 |
| Nitrogen | N | 672 |
| Oxygen | O | 743 |
| Sulphur | S | 24 |
| Formula | C2530H3874N672O743S24 |
| Total Number of Atoms: | 7843 |
| Total number of positively charged residues (ARG + LYS): | 50 |
| Total number of negatively charged residues (ASP + GLU): | 59 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 68925 Absorption 0.1% (=1 g/l) 1.223, assuming all pairs of CYS residues form cystines Ext. coefficient 68300 Absorption 0.1% (=1 g/l) 1.212, assuming all CYS residues are reduced |
| Aromaticity: | 0.112 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.98 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.71, 24.61, 26.57] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.1536 |
| Grand average of hydropathicity (GRAVY): | -0.20 |