Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4778 |
| Number of amino acids: | 628 |
| Molecular Weight: | 69812.31 Da |
| Theoretical pI: | 5.3 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 40 | 6.37% |
| Cysteine CYS (C) | 35 | 5.57% |
| Glutamic Acid GLU (E) | 41 | 6.53% |
| Aspartic Acid ASP (D) | 47 | 7.48% |
| Glycine GLY (G) | 47 | 7.48% |
| Phynylalanine PHE (F) | 22 | 3.5% |
| Isoleucine ILE (I) | 26 | 4.14% |
| Histidine HIS (H) | 9 | 1.43% |
| Lysine LYS (K) | 51 | 8.12% |
| Methionine MET (M) | 14 | 2.23% |
| Leucine LEU (L) | 44 | 7.01% |
| Asparagine ASN (N) | 28 | 4.46% |
| Glutamine GLN (Q) | 21 | 3.34% |
| Proline PRO (P) | 31 | 4.94% |
| Serine SER (S) | 45 | 7.17% |
| Arginine ARG (R) | 22 | 3.5% |
| Threonine THR (T) | 27 | 4.3% |
| Tryptophan TRP (W) | 13 | 2.07% |
| Valine VAL (V) | 44 | 7.01% |
| Tyrosine TYR (Y) | 21 | 3.34% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3059 |
| Hydrogen | H | 4755 |
| Nitrogen | N | 825 |
| Oxygen | O | 947 |
| Sulphur | S | 49 |
| Formula | C3059H4755N825O947S49 |
| Total Number of Atoms: | 9635 |
| Total number of positively charged residues (ARG + LYS): | 73 |
| Total number of negatively charged residues (ASP + GLU): | 88 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 104915 Absorption 0.1% (=1 g/l) 1.503, assuming all pairs of CYS residues form cystines Ext. coefficient 102790 Absorption 0.1% (=1 g/l) 1.472, assuming all CYS residues are reduced |
| Aromaticity: | 0.089 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.66 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.07, 24.04, 22.13] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 70.1593 |
| Grand average of hydropathicity (GRAVY): | -0.40 |