Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4733 |
| Number of amino acids: | 435 |
| Molecular Weight: | 49237 Da |
| Theoretical pI: | 6.04 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 13 | 2.99% |
| Cysteine CYS (C) | 8 | 1.84% |
| Glutamic Acid GLU (E) | 21 | 4.83% |
| Aspartic Acid ASP (D) | 25 | 5.75% |
| Glycine GLY (G) | 37 | 8.51% |
| Phynylalanine PHE (F) | 15 | 3.45% |
| Isoleucine ILE (I) | 30 | 6.9% |
| Histidine HIS (H) | 7 | 1.61% |
| Lysine LYS (K) | 26 | 5.98% |
| Methionine MET (M) | 9 | 2.07% |
| Leucine LEU (L) | 44 | 10.11% |
| Asparagine ASN (N) | 23 | 5.29% |
| Glutamine GLN (Q) | 12 | 2.76% |
| Proline PRO (P) | 24 | 5.52% |
| Serine SER (S) | 39 | 8.97% |
| Arginine ARG (R) | 16 | 3.68% |
| Threonine THR (T) | 26 | 5.98% |
| Tryptophan TRP (W) | 11 | 2.53% |
| Valine VAL (V) | 21 | 4.83% |
| Tyrosine TYR (Y) | 28 | 6.44% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2231 |
| Hydrogen | H | 3403 |
| Nitrogen | N | 569 |
| Oxygen | O | 656 |
| Sulphur | S | 17 |
| Formula | C2231H3403N569O656S17 |
| Total Number of Atoms: | 6876 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 46 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 102720 Absorption 0.1% (=1 g/l) 2.086, assuming all pairs of CYS residues form cystines Ext. coefficient 102220 Absorption 0.1% (=1 g/l) 2.076, assuming all CYS residues are reduced |
| Aromaticity: | 0.124 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.63 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.25, 28.28, 20.00] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.3332 |
| Grand average of hydropathicity (GRAVY): | -0.31 |