Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4708 |
| Number of amino acids: | 500 |
| Molecular Weight: | 55334.08 Da |
| Theoretical pI: | 5.89 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 49 | 9.8% |
| Cysteine CYS (C) | 10 | 2% |
| Glutamic Acid GLU (E) | 27 | 5.4% |
| Aspartic Acid ASP (D) | 31 | 6.2% |
| Glycine GLY (G) | 44 | 8.8% |
| Phynylalanine PHE (F) | 30 | 6% |
| Isoleucine ILE (I) | 24 | 4.8% |
| Histidine HIS (H) | 12 | 2.4% |
| Lysine LYS (K) | 28 | 5.6% |
| Methionine MET (M) | 13 | 2.6% |
| Leucine LEU (L) | 47 | 9.4% |
| Asparagine ASN (N) | 24 | 4.8% |
| Glutamine GLN (Q) | 12 | 2.4% |
| Proline PRO (P) | 24 | 4.8% |
| Serine SER (S) | 28 | 5.6% |
| Arginine ARG (R) | 22 | 4.4% |
| Threonine THR (T) | 21 | 4.2% |
| Tryptophan TRP (W) | 7 | 1.4% |
| Valine VAL (V) | 27 | 5.4% |
| Tyrosine TYR (Y) | 20 | 4% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2493 |
| Hydrogen | H | 3813 |
| Nitrogen | N | 661 |
| Oxygen | O | 722 |
| Sulphur | S | 23 |
| Formula | C2493H3813N661O722S23 |
| Total Number of Atoms: | 7712 |
| Total number of positively charged residues (ARG + LYS): | 50 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 68925 Absorption 0.1% (=1 g/l) 1.246, assuming all pairs of CYS residues form cystines Ext. coefficient 68300 Absorption 0.1% (=1 g/l) 1.234, assuming all CYS residues are reduced |
| Aromaticity: | 0.114 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.09 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.00, 24.00, 27.20] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.84 |
| Grand average of hydropathicity (GRAVY): | -0.16 |