Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4629 |
| Number of amino acids: | 718 |
| Molecular Weight: | 79759.1 Da |
| Theoretical pI: | 8.97 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 39 | 5.43% |
| Cysteine CYS (C) | 9 | 1.25% |
| Glutamic Acid GLU (E) | 32 | 4.46% |
| Aspartic Acid ASP (D) | 26 | 3.62% |
| Glycine GLY (G) | 71 | 9.89% |
| Phynylalanine PHE (F) | 33 | 4.6% |
| Isoleucine ILE (I) | 44 | 6.13% |
| Histidine HIS (H) | 14 | 1.95% |
| Lysine LYS (K) | 45 | 6.27% |
| Methionine MET (M) | 18 | 2.51% |
| Leucine LEU (L) | 61 | 8.5% |
| Asparagine ASN (N) | 43 | 5.99% |
| Glutamine GLN (Q) | 29 | 4.04% |
| Proline PRO (P) | 40 | 5.57% |
| Serine SER (S) | 59 | 8.22% |
| Arginine ARG (R) | 25 | 3.48% |
| Threonine THR (T) | 36 | 5.01% |
| Tryptophan TRP (W) | 16 | 2.23% |
| Valine VAL (V) | 44 | 6.13% |
| Tyrosine TYR (Y) | 34 | 4.74% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3611 |
| Hydrogen | H | 5540 |
| Nitrogen | N | 954 |
| Oxygen | O | 1036 |
| Sulphur | S | 27 |
| Formula | C3611H5540N954O1036S27 |
| Total Number of Atoms: | 11168 |
| Total number of positively charged residues (ARG + LYS): | 70 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 139160 Absorption 0.1% (=1 g/l) 1.745, assuming all pairs of CYS residues form cystines Ext. coefficient 138660 Absorption 0.1% (=1 g/l) 1.738, assuming all CYS residues are reduced |
| Aromaticity: | 0.116 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.25 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.31, 29.67, 20.89] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.2367 |
| Grand average of hydropathicity (GRAVY): | -0.25 |