Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4623 |
| Number of amino acids: | 421 |
| Molecular Weight: | 43952.99 Da |
| Theoretical pI: | 8.5 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 38 | 9.03% |
| Cysteine CYS (C) | 12 | 2.85% |
| Glutamic Acid GLU (E) | 11 | 2.61% |
| Aspartic Acid ASP (D) | 22 | 5.23% |
| Glycine GLY (G) | 42 | 9.98% |
| Phynylalanine PHE (F) | 20 | 4.75% |
| Isoleucine ILE (I) | 29 | 6.89% |
| Histidine HIS (H) | 5 | 1.19% |
| Lysine LYS (K) | 36 | 8.55% |
| Methionine MET (M) | 6 | 1.43% |
| Leucine LEU (L) | 18 | 4.28% |
| Asparagine ASN (N) | 27 | 6.41% |
| Glutamine GLN (Q) | 12 | 2.85% |
| Proline PRO (P) | 24 | 5.7% |
| Serine SER (S) | 33 | 7.84% |
| Arginine ARG (R) | 2 | 0.48% |
| Threonine THR (T) | 41 | 9.74% |
| Tryptophan TRP (W) | 5 | 1.19% |
| Valine VAL (V) | 33 | 7.84% |
| Tyrosine TYR (Y) | 5 | 1.19% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1943 |
| Hydrogen | H | 3077 |
| Nitrogen | N | 517 |
| Oxygen | O | 606 |
| Sulphur | S | 18 |
| Formula | C1943H3077N517O606S18 |
| Total Number of Atoms: | 6161 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 33 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 35700 Absorption 0.1% (=1 g/l) 0.812, assuming all pairs of CYS residues form cystines Ext. coefficient 34950 Absorption 0.1% (=1 g/l) 0.795, assuming all CYS residues are reduced |
| Aromaticity: | 0.071 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 22.36 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.13, 29.93, 17.34] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 75.2969 |
| Grand average of hydropathicity (GRAVY): | -0.08 |