Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4620 |
| Number of amino acids: | 494 |
| Molecular Weight: | 54079.36 Da |
| Theoretical pI: | 5.33 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 41 | 8.3% |
| Cysteine CYS (C) | 11 | 2.23% |
| Glutamic Acid GLU (E) | 16 | 3.24% |
| Aspartic Acid ASP (D) | 31 | 6.28% |
| Glycine GLY (G) | 38 | 7.69% |
| Phynylalanine PHE (F) | 19 | 3.85% |
| Isoleucine ILE (I) | 14 | 2.83% |
| Histidine HIS (H) | 13 | 2.63% |
| Lysine LYS (K) | 17 | 3.44% |
| Methionine MET (M) | 9 | 1.82% |
| Leucine LEU (L) | 50 | 10.12% |
| Asparagine ASN (N) | 25 | 5.06% |
| Glutamine GLN (Q) | 20 | 4.05% |
| Proline PRO (P) | 23 | 4.66% |
| Serine SER (S) | 56 | 11.34% |
| Arginine ARG (R) | 16 | 3.24% |
| Threonine THR (T) | 29 | 5.87% |
| Tryptophan TRP (W) | 7 | 1.42% |
| Valine VAL (V) | 29 | 5.87% |
| Tyrosine TYR (Y) | 30 | 6.07% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2403 |
| Hydrogen | H | 3641 |
| Nitrogen | N | 637 |
| Oxygen | O | 749 |
| Sulphur | S | 20 |
| Formula | C2403H3641N637O749S20 |
| Total Number of Atoms: | 7450 |
| Total number of positively charged residues (ARG + LYS): | 33 |
| Total number of negatively charged residues (ASP + GLU): | 47 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 83825 Absorption 0.1% (=1 g/l) 1.550, assuming all pairs of CYS residues form cystines Ext. coefficient 83200 Absorption 0.1% (=1 g/l) 1.538, assuming all CYS residues are reduced |
| Aromaticity: | 0.113 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.99 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.16, 28.74, 23.48] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 75.8504 |
| Grand average of hydropathicity (GRAVY): | -0.24 |