Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4608 |
| Number of amino acids: | 345 |
| Molecular Weight: | 38248.39 Da |
| Theoretical pI: | 8.63 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 7.54% |
| Cysteine CYS (C) | 9 | 2.61% |
| Glutamic Acid GLU (E) | 13 | 3.77% |
| Aspartic Acid ASP (D) | 15 | 4.35% |
| Glycine GLY (G) | 29 | 8.41% |
| Phynylalanine PHE (F) | 16 | 4.64% |
| Isoleucine ILE (I) | 22 | 6.38% |
| Histidine HIS (H) | 3 | 0.87% |
| Lysine LYS (K) | 18 | 5.22% |
| Methionine MET (M) | 10 | 2.9% |
| Leucine LEU (L) | 18 | 5.22% |
| Asparagine ASN (N) | 25 | 7.25% |
| Glutamine GLN (Q) | 14 | 4.06% |
| Proline PRO (P) | 13 | 3.77% |
| Serine SER (S) | 33 | 9.57% |
| Arginine ARG (R) | 15 | 4.35% |
| Threonine THR (T) | 15 | 4.35% |
| Tryptophan TRP (W) | 8 | 2.32% |
| Valine VAL (V) | 26 | 7.54% |
| Tyrosine TYR (Y) | 17 | 4.93% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1703 |
| Hydrogen | H | 2611 |
| Nitrogen | N | 461 |
| Oxygen | O | 506 |
| Sulphur | S | 19 |
| Formula | C1703H2611N461O506S19 |
| Total Number of Atoms: | 5300 |
| Total number of positively charged residues (ARG + LYS): | 33 |
| Total number of negatively charged residues (ASP + GLU): | 28 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 69830 Absorption 0.1% (=1 g/l) 1.826, assuming all pairs of CYS residues form cystines Ext. coefficient 69330 Absorption 0.1% (=1 g/l) 1.813, assuming all CYS residues are reduced |
| Aromaticity: | 0.119 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.21 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.01, 28.99, 19.42] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.6087 |
| Grand average of hydropathicity (GRAVY): | -0.20 |