Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4584 |
| Number of amino acids: | 497 |
| Molecular Weight: | 55105.55 Da |
| Theoretical pI: | 5.87 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 7.24% |
| Cysteine CYS (C) | 10 | 2.01% |
| Glutamic Acid GLU (E) | 29 | 5.84% |
| Aspartic Acid ASP (D) | 27 | 5.43% |
| Glycine GLY (G) | 41 | 8.25% |
| Phynylalanine PHE (F) | 19 | 3.82% |
| Isoleucine ILE (I) | 20 | 4.02% |
| Histidine HIS (H) | 17 | 3.42% |
| Lysine LYS (K) | 32 | 6.44% |
| Methionine MET (M) | 18 | 3.62% |
| Leucine LEU (L) | 41 | 8.25% |
| Asparagine ASN (N) | 25 | 5.03% |
| Glutamine GLN (Q) | 20 | 4.02% |
| Proline PRO (P) | 28 | 5.63% |
| Serine SER (S) | 37 | 7.44% |
| Arginine ARG (R) | 13 | 2.62% |
| Threonine THR (T) | 20 | 4.02% |
| Tryptophan TRP (W) | 6 | 1.21% |
| Valine VAL (V) | 34 | 6.84% |
| Tyrosine TYR (Y) | 24 | 4.83% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2455 |
| Hydrogen | H | 3769 |
| Nitrogen | N | 653 |
| Oxygen | O | 736 |
| Sulphur | S | 28 |
| Formula | C2455H3769N653O736S28 |
| Total Number of Atoms: | 7641 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 56 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 69385 Absorption 0.1% (=1 g/l) 1.259, assuming all pairs of CYS residues form cystines Ext. coefficient 68760 Absorption 0.1% (=1 g/l) 1.248, assuming all CYS residues are reduced |
| Aromaticity: | 0.099 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.03 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.97, 26.36, 24.95] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.9497 |
| Grand average of hydropathicity (GRAVY): | -0.34 |