Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4550 |
| Number of amino acids: | 307 |
| Molecular Weight: | 32963.01 Da |
| Theoretical pI: | 8.36 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 8.47% |
| Cysteine CYS (C) | 2 | 0.65% |
| Glutamic Acid GLU (E) | 14 | 4.56% |
| Aspartic Acid ASP (D) | 13 | 4.23% |
| Glycine GLY (G) | 29 | 9.45% |
| Phynylalanine PHE (F) | 13 | 4.23% |
| Isoleucine ILE (I) | 15 | 4.89% |
| Histidine HIS (H) | 1 | 0.33% |
| Lysine LYS (K) | 23 | 7.49% |
| Methionine MET (M) | 6 | 1.95% |
| Leucine LEU (L) | 27 | 8.79% |
| Asparagine ASN (N) | 21 | 6.84% |
| Glutamine GLN (Q) | 16 | 5.21% |
| Proline PRO (P) | 22 | 7.17% |
| Serine SER (S) | 13 | 4.23% |
| Arginine ARG (R) | 6 | 1.95% |
| Threonine THR (T) | 13 | 4.23% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 35 | 11.4% |
| Tyrosine TYR (Y) | 12 | 3.91% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1491 |
| Hydrogen | H | 2367 |
| Nitrogen | N | 387 |
| Oxygen | O | 437 |
| Sulphur | S | 8 |
| Formula | C1491H2367N387O437S8 |
| Total Number of Atoms: | 4690 |
| Total number of positively charged residues (ARG + LYS): | 29 |
| Total number of negatively charged residues (ASP + GLU): | 27 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 18005 Absorption 0.1% (=1 g/l) 0.546, assuming all pairs of CYS residues form cystines Ext. coefficient 17880 Absorption 0.1% (=1 g/l) 0.542, assuming all CYS residues are reduced |
| Aromaticity: | 0.081 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 24.35 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.22, 27.69, 23.78] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 94.8861 |
| Grand average of hydropathicity (GRAVY): | -0.03 |