Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4524 |
| Number of amino acids: | 439 |
| Molecular Weight: | 49305.1 Da |
| Theoretical pI: | 6.63 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 5.69% |
| Cysteine CYS (C) | 21 | 4.78% |
| Glutamic Acid GLU (E) | 17 | 3.87% |
| Aspartic Acid ASP (D) | 20 | 4.56% |
| Glycine GLY (G) | 30 | 6.83% |
| Phynylalanine PHE (F) | 20 | 4.56% |
| Isoleucine ILE (I) | 20 | 4.56% |
| Histidine HIS (H) | 11 | 2.51% |
| Lysine LYS (K) | 9 | 2.05% |
| Methionine MET (M) | 12 | 2.73% |
| Leucine LEU (L) | 28 | 6.38% |
| Asparagine ASN (N) | 23 | 5.24% |
| Glutamine GLN (Q) | 21 | 4.78% |
| Proline PRO (P) | 33 | 7.52% |
| Serine SER (S) | 34 | 7.74% |
| Arginine ARG (R) | 26 | 5.92% |
| Threonine THR (T) | 25 | 5.69% |
| Tryptophan TRP (W) | 11 | 2.51% |
| Valine VAL (V) | 35 | 7.97% |
| Tyrosine TYR (Y) | 18 | 4.1% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2189 |
| Hydrogen | H | 3323 |
| Nitrogen | N | 603 |
| Oxygen | O | 635 |
| Sulphur | S | 33 |
| Formula | C2189H3323N603O635S33 |
| Total Number of Atoms: | 6783 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 37 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 88570 Absorption 0.1% (=1 g/l) 1.796, assuming all pairs of CYS residues form cystines Ext. coefficient 87320 Absorption 0.1% (=1 g/l) 1.771, assuming all CYS residues are reduced |
| Aromaticity: | 0.112 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 46.59 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.07, 27.33, 18.68] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.4579 |
| Grand average of hydropathicity (GRAVY): | -0.21 |