Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4511 |
| Number of amino acids: | 518 |
| Molecular Weight: | 58544.52 Da |
| Theoretical pI: | 8.79 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 6.56% |
| Cysteine CYS (C) | 8 | 1.54% |
| Glutamic Acid GLU (E) | 27 | 5.21% |
| Aspartic Acid ASP (D) | 14 | 2.7% |
| Glycine GLY (G) | 38 | 7.34% |
| Phynylalanine PHE (F) | 30 | 5.79% |
| Isoleucine ILE (I) | 26 | 5.02% |
| Histidine HIS (H) | 11 | 2.12% |
| Lysine LYS (K) | 17 | 3.28% |
| Methionine MET (M) | 6 | 1.16% |
| Leucine LEU (L) | 39 | 7.53% |
| Asparagine ASN (N) | 33 | 6.37% |
| Glutamine GLN (Q) | 69 | 13.32% |
| Proline PRO (P) | 23 | 4.44% |
| Serine SER (S) | 41 | 7.92% |
| Arginine ARG (R) | 30 | 5.79% |
| Threonine THR (T) | 20 | 3.86% |
| Tryptophan TRP (W) | 4 | 0.77% |
| Valine VAL (V) | 30 | 5.79% |
| Tyrosine TYR (Y) | 18 | 3.47% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2582 |
| Hydrogen | H | 3993 |
| Nitrogen | N | 753 |
| Oxygen | O | 782 |
| Sulphur | S | 14 |
| Formula | C2582H3993N753O782S14 |
| Total Number of Atoms: | 8124 |
| Total number of positively charged residues (ARG + LYS): | 47 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 49320 Absorption 0.1% (=1 g/l) 0.842, assuming all pairs of CYS residues form cystines Ext. coefficient 48820 Absorption 0.1% (=1 g/l) 0.834, assuming all CYS residues are reduced |
| Aromaticity: | 0.100 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 59.11 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.38, 26.06, 20.46] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.2973 |
| Grand average of hydropathicity (GRAVY): | -0.57 |