Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4440 |
| Number of amino acids: | 278 |
| Molecular Weight: | 29528.92 Da |
| Theoretical pI: | 8.81 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 12.23% |
| Cysteine CYS (C) | 10 | 3.6% |
| Glutamic Acid GLU (E) | 9 | 3.24% |
| Aspartic Acid ASP (D) | 14 | 5.04% |
| Glycine GLY (G) | 31 | 11.15% |
| Phynylalanine PHE (F) | 12 | 4.32% |
| Isoleucine ILE (I) | 7 | 2.52% |
| Histidine HIS (H) | 4 | 1.44% |
| Lysine LYS (K) | 12 | 4.32% |
| Methionine MET (M) | 6 | 2.16% |
| Leucine LEU (L) | 27 | 9.71% |
| Asparagine ASN (N) | 6 | 2.16% |
| Glutamine GLN (Q) | 5 | 1.8% |
| Proline PRO (P) | 10 | 3.6% |
| Serine SER (S) | 23 | 8.27% |
| Arginine ARG (R) | 17 | 6.12% |
| Threonine THR (T) | 15 | 5.4% |
| Tryptophan TRP (W) | 7 | 2.52% |
| Valine VAL (V) | 23 | 8.27% |
| Tyrosine TYR (Y) | 6 | 2.16% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1309 |
| Hydrogen | H | 2057 |
| Nitrogen | N | 367 |
| Oxygen | O | 380 |
| Sulphur | S | 16 |
| Formula | C1309H2057N367O380S16 |
| Total Number of Atoms: | 4129 |
| Total number of positively charged residues (ARG + LYS): | 29 |
| Total number of negatively charged residues (ASP + GLU): | 23 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 48065 Absorption 0.1% (=1 g/l) 1.628, assuming all pairs of CYS residues form cystines Ext. coefficient 47440 Absorption 0.1% (=1 g/l) 1.607, assuming all CYS residues are reduced |
| Aromaticity: | 0.090 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 26.20 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.50, 25.18, 27.34] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.9209 |
| Grand average of hydropathicity (GRAVY): | 0.13 |