Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4439 |
| Number of amino acids: | 495 |
| Molecular Weight: | 55706.34 Da |
| Theoretical pI: | 5.9 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 29 | 5.86% |
| Cysteine CYS (C) | 11 | 2.22% |
| Glutamic Acid GLU (E) | 41 | 8.28% |
| Aspartic Acid ASP (D) | 17 | 3.43% |
| Glycine GLY (G) | 36 | 7.27% |
| Phynylalanine PHE (F) | 24 | 4.85% |
| Isoleucine ILE (I) | 26 | 5.25% |
| Histidine HIS (H) | 8 | 1.62% |
| Lysine LYS (K) | 25 | 5.05% |
| Methionine MET (M) | 7 | 1.41% |
| Leucine LEU (L) | 37 | 7.47% |
| Asparagine ASN (N) | 37 | 7.47% |
| Glutamine GLN (Q) | 48 | 9.7% |
| Proline PRO (P) | 29 | 5.86% |
| Serine SER (S) | 34 | 6.87% |
| Arginine ARG (R) | 27 | 5.45% |
| Threonine THR (T) | 20 | 4.04% |
| Tryptophan TRP (W) | 4 | 0.81% |
| Valine VAL (V) | 24 | 4.85% |
| Tyrosine TYR (Y) | 11 | 2.22% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2432 |
| Hydrogen | H | 3808 |
| Nitrogen | N | 706 |
| Oxygen | O | 762 |
| Sulphur | S | 18 |
| Formula | C2432H3808N706O762S18 |
| Total Number of Atoms: | 7726 |
| Total number of positively charged residues (ARG + LYS): | 52 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 39015 Absorption 0.1% (=1 g/l) 0.700, assuming all pairs of CYS residues form cystines Ext. coefficient 38390 Absorption 0.1% (=1 g/l) 0.689, assuming all CYS residues are reduced |
| Aromaticity: | 0.079 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 57.46 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.45, 27.47, 23.03] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 69.5556 |
| Grand average of hydropathicity (GRAVY): | -0.70 |