Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4427 |
| Number of amino acids: | 505 |
| Molecular Weight: | 54206.45 Da |
| Theoretical pI: | 5.47 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 50 | 9.9% |
| Cysteine CYS (C) | 6 | 1.19% |
| Glutamic Acid GLU (E) | 14 | 2.77% |
| Aspartic Acid ASP (D) | 24 | 4.75% |
| Glycine GLY (G) | 30 | 5.94% |
| Phynylalanine PHE (F) | 13 | 2.57% |
| Isoleucine ILE (I) | 32 | 6.34% |
| Histidine HIS (H) | 9 | 1.78% |
| Lysine LYS (K) | 16 | 3.17% |
| Methionine MET (M) | 9 | 1.78% |
| Leucine LEU (L) | 54 | 10.69% |
| Asparagine ASN (N) | 45 | 8.91% |
| Glutamine GLN (Q) | 11 | 2.18% |
| Proline PRO (P) | 31 | 6.14% |
| Serine SER (S) | 46 | 9.11% |
| Arginine ARG (R) | 13 | 2.57% |
| Threonine THR (T) | 39 | 7.72% |
| Tryptophan TRP (W) | 5 | 0.99% |
| Valine VAL (V) | 36 | 7.13% |
| Tyrosine TYR (Y) | 22 | 4.36% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2417 |
| Hydrogen | H | 3795 |
| Nitrogen | N | 639 |
| Oxygen | O | 745 |
| Sulphur | S | 15 |
| Formula | C2417H3795N639O745S15 |
| Total Number of Atoms: | 7611 |
| Total number of positively charged residues (ARG + LYS): | 29 |
| Total number of negatively charged residues (ASP + GLU): | 38 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 60655 Absorption 0.1% (=1 g/l) 1.119, assuming all pairs of CYS residues form cystines Ext. coefficient 60280 Absorption 0.1% (=1 g/l) 1.112, assuming all CYS residues are reduced |
| Aromaticity: | 0.079 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.74 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.08, 30.10, 25.15] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 96.9902 |
| Grand average of hydropathicity (GRAVY): | 0.04 |