Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4425 |
| Number of amino acids: | 516 |
| Molecular Weight: | 55110.55 Da |
| Theoretical pI: | 5.52 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 64 | 12.4% |
| Cysteine CYS (C) | 8 | 1.55% |
| Glutamic Acid GLU (E) | 19 | 3.68% |
| Aspartic Acid ASP (D) | 31 | 6.01% |
| Glycine GLY (G) | 52 | 10.08% |
| Phynylalanine PHE (F) | 23 | 4.46% |
| Isoleucine ILE (I) | 13 | 2.52% |
| Histidine HIS (H) | 6 | 1.16% |
| Lysine LYS (K) | 17 | 3.29% |
| Methionine MET (M) | 11 | 2.13% |
| Leucine LEU (L) | 46 | 8.91% |
| Asparagine ASN (N) | 25 | 4.84% |
| Glutamine GLN (Q) | 17 | 3.29% |
| Proline PRO (P) | 21 | 4.07% |
| Serine SER (S) | 49 | 9.5% |
| Arginine ARG (R) | 26 | 5.04% |
| Threonine THR (T) | 31 | 6.01% |
| Tryptophan TRP (W) | 8 | 1.55% |
| Valine VAL (V) | 28 | 5.43% |
| Tyrosine TYR (Y) | 21 | 4.07% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2427 |
| Hydrogen | H | 3735 |
| Nitrogen | N | 673 |
| Oxygen | O | 760 |
| Sulphur | S | 19 |
| Formula | C2427H3735N673O760S19 |
| Total Number of Atoms: | 7614 |
| Total number of positively charged residues (ARG + LYS): | 43 |
| Total number of negatively charged residues (ASP + GLU): | 50 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 75790 Absorption 0.1% (=1 g/l) 1.375, assuming all pairs of CYS residues form cystines Ext. coefficient 75290 Absorption 0.1% (=1 g/l) 1.366, assuming all CYS residues are reduced |
| Aromaticity: | 0.101 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.30 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.94, 28.49, 27.13] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.7326 |
| Grand average of hydropathicity (GRAVY): | -0.20 |