Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4424 |
| Number of amino acids: | 486 |
| Molecular Weight: | 55638.66 Da |
| Theoretical pI: | 8.4 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 6.17% |
| Cysteine CYS (C) | 13 | 2.67% |
| Glutamic Acid GLU (E) | 33 | 6.79% |
| Aspartic Acid ASP (D) | 20 | 4.12% |
| Glycine GLY (G) | 25 | 5.14% |
| Phynylalanine PHE (F) | 22 | 4.53% |
| Isoleucine ILE (I) | 25 | 5.14% |
| Histidine HIS (H) | 9 | 1.85% |
| Lysine LYS (K) | 37 | 7.61% |
| Methionine MET (M) | 17 | 3.5% |
| Leucine LEU (L) | 33 | 6.79% |
| Asparagine ASN (N) | 30 | 6.17% |
| Glutamine GLN (Q) | 18 | 3.7% |
| Proline PRO (P) | 22 | 4.53% |
| Serine SER (S) | 35 | 7.2% |
| Arginine ARG (R) | 21 | 4.32% |
| Threonine THR (T) | 28 | 5.76% |
| Tryptophan TRP (W) | 9 | 1.85% |
| Valine VAL (V) | 34 | 7% |
| Tyrosine TYR (Y) | 25 | 5.14% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2488 |
| Hydrogen | H | 3841 |
| Nitrogen | N | 661 |
| Oxygen | O | 729 |
| Sulphur | S | 30 |
| Formula | C2488H3841N661O729S30 |
| Total Number of Atoms: | 7749 |
| Total number of positively charged residues (ARG + LYS): | 58 |
| Total number of negatively charged residues (ASP + GLU): | 53 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 87500 Absorption 0.1% (=1 g/l) 1.573, assuming all pairs of CYS residues form cystines Ext. coefficient 86750 Absorption 0.1% (=1 g/l) 1.559, assuming all CYS residues are reduced |
| Aromaticity: | 0.115 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 44.00 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.45, 23.05, 23.25] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.0041 |
| Grand average of hydropathicity (GRAVY): | -0.40 |