Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4389 |
| Number of amino acids: | 453 |
| Molecular Weight: | 47901.19 Da |
| Theoretical pI: | 5.61 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 64 | 14.13% |
| Cysteine CYS (C) | 4 | 0.88% |
| Glutamic Acid GLU (E) | 29 | 6.4% |
| Aspartic Acid ASP (D) | 35 | 7.73% |
| Glycine GLY (G) | 47 | 10.38% |
| Phynylalanine PHE (F) | 9 | 1.99% |
| Isoleucine ILE (I) | 11 | 2.43% |
| Histidine HIS (H) | 6 | 1.32% |
| Lysine LYS (K) | 21 | 4.64% |
| Methionine MET (M) | 14 | 3.09% |
| Leucine LEU (L) | 48 | 10.6% |
| Asparagine ASN (N) | 7 | 1.55% |
| Glutamine GLN (Q) | 16 | 3.53% |
| Proline PRO (P) | 25 | 5.52% |
| Serine SER (S) | 32 | 7.06% |
| Arginine ARG (R) | 36 | 7.95% |
| Threonine THR (T) | 16 | 3.53% |
| Tryptophan TRP (W) | 4 | 0.88% |
| Valine VAL (V) | 26 | 5.74% |
| Tyrosine TYR (Y) | 3 | 0.66% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2060 |
| Hydrogen | H | 3361 |
| Nitrogen | N | 621 |
| Oxygen | O | 656 |
| Sulphur | S | 18 |
| Formula | C2060H3361N621O656S18 |
| Total Number of Atoms: | 6716 |
| Total number of positively charged residues (ARG + LYS): | 57 |
| Total number of negatively charged residues (ASP + GLU): | 64 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 26720 Absorption 0.1% (=1 g/l) 0.558, assuming all pairs of CYS residues form cystines Ext. coefficient 26470 Absorption 0.1% (=1 g/l) 0.553, assuming all CYS residues are reduced |
| Aromaticity: | 0.035 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 49.93 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [22.30, 24.50, 34.22] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.5672 |
| Grand average of hydropathicity (GRAVY): | -0.34 |