Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4366 |
| Number of amino acids: | 485 |
| Molecular Weight: | 54390.76 Da |
| Theoretical pI: | 5.46 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 6.8% |
| Cysteine CYS (C) | 10 | 2.06% |
| Glutamic Acid GLU (E) | 37 | 7.63% |
| Aspartic Acid ASP (D) | 18 | 3.71% |
| Glycine GLY (G) | 35 | 7.22% |
| Phynylalanine PHE (F) | 22 | 4.54% |
| Isoleucine ILE (I) | 23 | 4.74% |
| Histidine HIS (H) | 4 | 0.82% |
| Lysine LYS (K) | 19 | 3.92% |
| Methionine MET (M) | 8 | 1.65% |
| Leucine LEU (L) | 38 | 7.84% |
| Asparagine ASN (N) | 40 | 8.25% |
| Glutamine GLN (Q) | 51 | 10.52% |
| Proline PRO (P) | 26 | 5.36% |
| Serine SER (S) | 32 | 6.6% |
| Arginine ARG (R) | 29 | 5.98% |
| Threonine THR (T) | 18 | 3.71% |
| Tryptophan TRP (W) | 4 | 0.82% |
| Valine VAL (V) | 27 | 5.57% |
| Tyrosine TYR (Y) | 11 | 2.27% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2363 |
| Hydrogen | H | 3714 |
| Nitrogen | N | 694 |
| Oxygen | O | 748 |
| Sulphur | S | 18 |
| Formula | C2363H3714N694O748S18 |
| Total Number of Atoms: | 7537 |
| Total number of positively charged residues (ARG + LYS): | 48 |
| Total number of negatively charged residues (ASP + GLU): | 55 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 39015 Absorption 0.1% (=1 g/l) 0.717, assuming all pairs of CYS residues form cystines Ext. coefficient 38390 Absorption 0.1% (=1 g/l) 0.706, assuming all CYS residues are reduced |
| Aromaticity: | 0.076 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 60.41 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.77, 27.42, 23.92] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72 |
| Grand average of hydropathicity (GRAVY): | -0.66 |