Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4333 |
| Number of amino acids: | 534 |
| Molecular Weight: | 58007.51 Da |
| Theoretical pI: | 9.61 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 6.74% |
| Cysteine CYS (C) | 13 | 2.43% |
| Glutamic Acid GLU (E) | 14 | 2.62% |
| Aspartic Acid ASP (D) | 16 | 3% |
| Glycine GLY (G) | 29 | 5.43% |
| Phynylalanine PHE (F) | 20 | 3.75% |
| Isoleucine ILE (I) | 26 | 4.87% |
| Histidine HIS (H) | 4 | 0.75% |
| Lysine LYS (K) | 45 | 8.43% |
| Methionine MET (M) | 9 | 1.69% |
| Leucine LEU (L) | 39 | 7.3% |
| Asparagine ASN (N) | 22 | 4.12% |
| Glutamine GLN (Q) | 18 | 3.37% |
| Proline PRO (P) | 100 | 18.73% |
| Serine SER (S) | 44 | 8.24% |
| Arginine ARG (R) | 16 | 3% |
| Threonine THR (T) | 30 | 5.62% |
| Tryptophan TRP (W) | 5 | 0.94% |
| Valine VAL (V) | 26 | 4.87% |
| Tyrosine TYR (Y) | 22 | 4.12% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2657 |
| Hydrogen | H | 4136 |
| Nitrogen | N | 680 |
| Oxygen | O | 731 |
| Sulphur | S | 22 |
| Formula | C2657H4136N680O731S22 |
| Total Number of Atoms: | 8226 |
| Total number of positively charged residues (ARG + LYS): | 61 |
| Total number of negatively charged residues (ASP + GLU): | 30 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 61030 Absorption 0.1% (=1 g/l) 1.052, assuming all pairs of CYS residues form cystines Ext. coefficient 60280 Absorption 0.1% (=1 g/l) 1.039, assuming all CYS residues are reduced |
| Aromaticity: | 0.088 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 57.62 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.84, 36.52, 18.35] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 68.3333 |
| Grand average of hydropathicity (GRAVY): | -0.41 |