Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4325 |
| Number of amino acids: | 484 |
| Molecular Weight: | 53389 Da |
| Theoretical pI: | 5.59 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 7.44% |
| Cysteine CYS (C) | 8 | 1.65% |
| Glutamic Acid GLU (E) | 26 | 5.37% |
| Aspartic Acid ASP (D) | 33 | 6.82% |
| Glycine GLY (G) | 43 | 8.88% |
| Phynylalanine PHE (F) | 18 | 3.72% |
| Isoleucine ILE (I) | 18 | 3.72% |
| Histidine HIS (H) | 16 | 3.31% |
| Lysine LYS (K) | 26 | 5.37% |
| Methionine MET (M) | 11 | 2.27% |
| Leucine LEU (L) | 47 | 9.71% |
| Asparagine ASN (N) | 25 | 5.17% |
| Glutamine GLN (Q) | 11 | 2.27% |
| Proline PRO (P) | 21 | 4.34% |
| Serine SER (S) | 42 | 8.68% |
| Arginine ARG (R) | 19 | 3.93% |
| Threonine THR (T) | 23 | 4.75% |
| Tryptophan TRP (W) | 8 | 1.65% |
| Valine VAL (V) | 31 | 6.4% |
| Tyrosine TYR (Y) | 22 | 4.55% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2372 |
| Hydrogen | H | 3639 |
| Nitrogen | N | 643 |
| Oxygen | O | 726 |
| Sulphur | S | 19 |
| Formula | C2372H3639N643O726S19 |
| Total Number of Atoms: | 7399 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 59 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 77280 Absorption 0.1% (=1 g/l) 1.447, assuming all pairs of CYS residues form cystines Ext. coefficient 76780 Absorption 0.1% (=1 g/l) 1.438, assuming all CYS residues are reduced |
| Aromaticity: | 0.099 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 41.73 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.75, 27.07, 24.79] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.3884 |
| Grand average of hydropathicity (GRAVY): | -0.33 |