Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4323 |
| Number of amino acids: | 487 |
| Molecular Weight: | 54914.59 Da |
| Theoretical pI: | 7.69 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 4.31% |
| Cysteine CYS (C) | 9 | 1.85% |
| Glutamic Acid GLU (E) | 25 | 5.13% |
| Aspartic Acid ASP (D) | 25 | 5.13% |
| Glycine GLY (G) | 36 | 7.39% |
| Phynylalanine PHE (F) | 23 | 4.72% |
| Isoleucine ILE (I) | 26 | 5.34% |
| Histidine HIS (H) | 12 | 2.46% |
| Lysine LYS (K) | 31 | 6.37% |
| Methionine MET (M) | 9 | 1.85% |
| Leucine LEU (L) | 49 | 10.06% |
| Asparagine ASN (N) | 30 | 6.16% |
| Glutamine GLN (Q) | 17 | 3.49% |
| Proline PRO (P) | 27 | 5.54% |
| Serine SER (S) | 36 | 7.39% |
| Arginine ARG (R) | 20 | 4.11% |
| Threonine THR (T) | 30 | 6.16% |
| Tryptophan TRP (W) | 7 | 1.44% |
| Valine VAL (V) | 31 | 6.37% |
| Tyrosine TYR (Y) | 23 | 4.72% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2474 |
| Hydrogen | H | 3820 |
| Nitrogen | N | 656 |
| Oxygen | O | 724 |
| Sulphur | S | 18 |
| Formula | C2474H3820N656O724S18 |
| Total Number of Atoms: | 7692 |
| Total number of positively charged residues (ARG + LYS): | 51 |
| Total number of negatively charged residues (ASP + GLU): | 50 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 73270 Absorption 0.1% (=1 g/l) 1.334, assuming all pairs of CYS residues form cystines Ext. coefficient 72770 Absorption 0.1% (=1 g/l) 1.325, assuming all CYS residues are reduced |
| Aromaticity: | 0.109 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.18 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.65, 26.49, 21.36] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.8337 |
| Grand average of hydropathicity (GRAVY): | -0.32 |