Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4317 |
| Number of amino acids: | 516 |
| Molecular Weight: | 57956.12 Da |
| Theoretical pI: | 5.6 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 20 | 3.88% |
| Cysteine CYS (C) | 8 | 1.55% |
| Glutamic Acid GLU (E) | 42 | 8.14% |
| Aspartic Acid ASP (D) | 24 | 4.65% |
| Glycine GLY (G) | 41 | 7.95% |
| Phynylalanine PHE (F) | 18 | 3.49% |
| Isoleucine ILE (I) | 17 | 3.29% |
| Histidine HIS (H) | 15 | 2.91% |
| Lysine LYS (K) | 19 | 3.68% |
| Methionine MET (M) | 5 | 0.97% |
| Leucine LEU (L) | 41 | 7.95% |
| Asparagine ASN (N) | 33 | 6.4% |
| Glutamine GLN (Q) | 45 | 8.72% |
| Proline PRO (P) | 38 | 7.36% |
| Serine SER (S) | 43 | 8.33% |
| Arginine ARG (R) | 33 | 6.4% |
| Threonine THR (T) | 21 | 4.07% |
| Tryptophan TRP (W) | 4 | 0.78% |
| Valine VAL (V) | 34 | 6.59% |
| Tyrosine TYR (Y) | 15 | 2.91% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2518 |
| Hydrogen | H | 3920 |
| Nitrogen | N | 746 |
| Oxygen | O | 806 |
| Sulphur | S | 13 |
| Formula | C2518H3920N746O806S13 |
| Total Number of Atoms: | 8003 |
| Total number of positively charged residues (ARG + LYS): | 52 |
| Total number of negatively charged residues (ASP + GLU): | 66 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 44850 Absorption 0.1% (=1 g/l) 0.774, assuming all pairs of CYS residues form cystines Ext. coefficient 44350 Absorption 0.1% (=1 g/l) 0.765, assuming all CYS residues are reduced |
| Aromaticity: | 0.072 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 58.03 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.00, 30.04, 20.93] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 66.8217 |
| Grand average of hydropathicity (GRAVY): | -0.84 |