Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4316 |
| Number of amino acids: | 496 |
| Molecular Weight: | 54089.89 Da |
| Theoretical pI: | 5.78 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 6.65% |
| Cysteine CYS (C) | 15 | 3.02% |
| Glutamic Acid GLU (E) | 23 | 4.64% |
| Aspartic Acid ASP (D) | 28 | 5.65% |
| Glycine GLY (G) | 45 | 9.07% |
| Phynylalanine PHE (F) | 23 | 4.64% |
| Isoleucine ILE (I) | 30 | 6.05% |
| Histidine HIS (H) | 9 | 1.81% |
| Lysine LYS (K) | 31 | 6.25% |
| Methionine MET (M) | 11 | 2.22% |
| Leucine LEU (L) | 47 | 9.48% |
| Asparagine ASN (N) | 22 | 4.44% |
| Glutamine GLN (Q) | 19 | 3.83% |
| Proline PRO (P) | 21 | 4.23% |
| Serine SER (S) | 43 | 8.67% |
| Arginine ARG (R) | 13 | 2.62% |
| Threonine THR (T) | 25 | 5.04% |
| Tryptophan TRP (W) | 7 | 1.41% |
| Valine VAL (V) | 35 | 7.06% |
| Tyrosine TYR (Y) | 16 | 3.23% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2416 |
| Hydrogen | H | 3772 |
| Nitrogen | N | 632 |
| Oxygen | O | 724 |
| Sulphur | S | 26 |
| Formula | C2416H3772N632O724S26 |
| Total Number of Atoms: | 7570 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 51 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63215 Absorption 0.1% (=1 g/l) 1.169, assuming all pairs of CYS residues form cystines Ext. coefficient 62340 Absorption 0.1% (=1 g/l) 1.153, assuming all CYS residues are reduced |
| Aromaticity: | 0.093 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.33 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.85, 26.41, 22.98] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 87.6613 |
| Grand average of hydropathicity (GRAVY): | -0.04 |