Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4314 |
| Number of amino acids: | 372 |
| Molecular Weight: | 40935.57 Da |
| Theoretical pI: | 6.89 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 9.68% |
| Cysteine CYS (C) | 5 | 1.34% |
| Glutamic Acid GLU (E) | 30 | 8.06% |
| Aspartic Acid ASP (D) | 22 | 5.91% |
| Glycine GLY (G) | 26 | 6.99% |
| Phynylalanine PHE (F) | 17 | 4.57% |
| Isoleucine ILE (I) | 28 | 7.53% |
| Histidine HIS (H) | 10 | 2.69% |
| Lysine LYS (K) | 32 | 8.6% |
| Methionine MET (M) | 7 | 1.88% |
| Leucine LEU (L) | 45 | 12.1% |
| Asparagine ASN (N) | 11 | 2.96% |
| Glutamine GLN (Q) | 6 | 1.61% |
| Proline PRO (P) | 11 | 2.96% |
| Serine SER (S) | 21 | 5.65% |
| Arginine ARG (R) | 19 | 5.11% |
| Threonine THR (T) | 16 | 4.3% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 25 | 6.72% |
| Tyrosine TYR (Y) | 5 | 1.34% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1831 |
| Hydrogen | H | 2984 |
| Nitrogen | N | 498 |
| Oxygen | O | 536 |
| Sulphur | S | 12 |
| Formula | C1831H2984N498O536S12 |
| Total Number of Atoms: | 5861 |
| Total number of positively charged residues (ARG + LYS): | 51 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 7700 Absorption 0.1% (=1 g/l) 0.188, assuming all pairs of CYS residues form cystines Ext. coefficient 7450 Absorption 0.1% (=1 g/l) 0.182, assuming all CYS residues are reduced |
| Aromaticity: | 0.059 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.66 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.26, 18.55, 31.72] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 105.699 |
| Grand average of hydropathicity (GRAVY): | -0.02 |