Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4308 |
| Number of amino acids: | 933 |
| Molecular Weight: | 104688.86 Da |
| Theoretical pI: | 8.92 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 56 | 6% |
| Cysteine CYS (C) | 11 | 1.18% |
| Glutamic Acid GLU (E) | 44 | 4.72% |
| Aspartic Acid ASP (D) | 48 | 5.14% |
| Glycine GLY (G) | 66 | 7.07% |
| Phynylalanine PHE (F) | 58 | 6.22% |
| Isoleucine ILE (I) | 57 | 6.11% |
| Histidine HIS (H) | 16 | 1.71% |
| Lysine LYS (K) | 53 | 5.68% |
| Methionine MET (M) | 29 | 3.11% |
| Leucine LEU (L) | 94 | 10.08% |
| Asparagine ASN (N) | 44 | 4.72% |
| Glutamine GLN (Q) | 25 | 2.68% |
| Proline PRO (P) | 40 | 4.29% |
| Serine SER (S) | 79 | 8.47% |
| Arginine ARG (R) | 51 | 5.47% |
| Threonine THR (T) | 50 | 5.36% |
| Tryptophan TRP (W) | 16 | 1.71% |
| Valine VAL (V) | 70 | 7.5% |
| Tyrosine TYR (Y) | 26 | 2.79% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 4736 |
| Hydrogen | H | 7400 |
| Nitrogen | N | 1256 |
| Oxygen | O | 1342 |
| Sulphur | S | 40 |
| Formula | C4736H7400N1256O1342S40 |
| Total Number of Atoms: | 14774 |
| Total number of positively charged residues (ARG + LYS): | 104 |
| Total number of negatively charged residues (ASP + GLU): | 92 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 127365 Absorption 0.1% (=1 g/l) 1.217, assuming all pairs of CYS residues form cystines Ext. coefficient 126740 Absorption 0.1% (=1 g/l) 1.211, assuming all CYS residues are reduced |
| Aromaticity: | 0.107 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 31.52 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.41, 24.54, 23.90] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.8788 |
| Grand average of hydropathicity (GRAVY): | -0.04 |