Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4296 |
| Number of amino acids: | 490 |
| Molecular Weight: | 52642.29 Da |
| Theoretical pI: | 7.8 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 59 | 12.04% |
| Cysteine CYS (C) | 22 | 4.49% |
| Glutamic Acid GLU (E) | 27 | 5.51% |
| Aspartic Acid ASP (D) | 27 | 5.51% |
| Glycine GLY (G) | 54 | 11.02% |
| Phynylalanine PHE (F) | 16 | 3.27% |
| Isoleucine ILE (I) | 18 | 3.67% |
| Histidine HIS (H) | 9 | 1.84% |
| Lysine LYS (K) | 19 | 3.88% |
| Methionine MET (M) | 10 | 2.04% |
| Leucine LEU (L) | 23 | 4.69% |
| Asparagine ASN (N) | 25 | 5.1% |
| Glutamine GLN (Q) | 10 | 2.04% |
| Proline PRO (P) | 29 | 5.92% |
| Serine SER (S) | 27 | 5.51% |
| Arginine ARG (R) | 37 | 7.55% |
| Threonine THR (T) | 21 | 4.29% |
| Tryptophan TRP (W) | 8 | 1.63% |
| Valine VAL (V) | 34 | 6.94% |
| Tyrosine TYR (Y) | 15 | 3.06% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2277 |
| Hydrogen | H | 3549 |
| Nitrogen | N | 681 |
| Oxygen | O | 697 |
| Sulphur | S | 32 |
| Formula | C2277H3549N681O697S32 |
| Total Number of Atoms: | 7236 |
| Total number of positively charged residues (ARG + LYS): | 56 |
| Total number of negatively charged residues (ASP + GLU): | 54 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 67725 Absorption 0.1% (=1 g/l) 1.287, assuming all pairs of CYS residues form cystines Ext. coefficient 66350 Absorption 0.1% (=1 g/l) 1.260, assuming all CYS residues are reduced |
| Aromaticity: | 0.080 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.09 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [23.27, 27.55, 24.29] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 64.7959 |
| Grand average of hydropathicity (GRAVY): | -0.36 |