Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4292 |
| Number of amino acids: | 500 |
| Molecular Weight: | 55298.12 Da |
| Theoretical pI: | 5.84 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 5.2% |
| Cysteine CYS (C) | 5 | 1% |
| Glutamic Acid GLU (E) | 29 | 5.8% |
| Aspartic Acid ASP (D) | 25 | 5% |
| Glycine GLY (G) | 37 | 7.4% |
| Phynylalanine PHE (F) | 25 | 5% |
| Isoleucine ILE (I) | 31 | 6.2% |
| Histidine HIS (H) | 13 | 2.6% |
| Lysine LYS (K) | 24 | 4.8% |
| Methionine MET (M) | 10 | 2% |
| Leucine LEU (L) | 57 | 11.4% |
| Asparagine ASN (N) | 20 | 4% |
| Glutamine GLN (Q) | 8 | 1.6% |
| Proline PRO (P) | 21 | 4.2% |
| Serine SER (S) | 55 | 11% |
| Arginine ARG (R) | 21 | 4.2% |
| Threonine THR (T) | 33 | 6.6% |
| Tryptophan TRP (W) | 6 | 1.2% |
| Valine VAL (V) | 36 | 7.2% |
| Tyrosine TYR (Y) | 18 | 3.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2493 |
| Hydrogen | H | 3893 |
| Nitrogen | N | 647 |
| Oxygen | O | 743 |
| Sulphur | S | 15 |
| Formula | C2493H3893N647O743S15 |
| Total Number of Atoms: | 7791 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 54 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 60070 Absorption 0.1% (=1 g/l) 1.086, assuming all pairs of CYS residues form cystines Ext. coefficient 59820 Absorption 0.1% (=1 g/l) 1.082, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.63 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.60, 26.60, 24.40] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 94.72 |
| Grand average of hydropathicity (GRAVY): | -0.01 |