Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4282 |
| Number of amino acids: | 516 |
| Molecular Weight: | 57301.38 Da |
| Theoretical pI: | 5.2 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 37 | 7.17% |
| Cysteine CYS (C) | 9 | 1.74% |
| Glutamic Acid GLU (E) | 30 | 5.81% |
| Aspartic Acid ASP (D) | 31 | 6.01% |
| Glycine GLY (G) | 42 | 8.14% |
| Phynylalanine PHE (F) | 28 | 5.43% |
| Isoleucine ILE (I) | 23 | 4.46% |
| Histidine HIS (H) | 11 | 2.13% |
| Lysine LYS (K) | 29 | 5.62% |
| Methionine MET (M) | 14 | 2.71% |
| Leucine LEU (L) | 57 | 11.05% |
| Asparagine ASN (N) | 26 | 5.04% |
| Glutamine GLN (Q) | 13 | 2.52% |
| Proline PRO (P) | 22 | 4.26% |
| Serine SER (S) | 38 | 7.36% |
| Arginine ARG (R) | 16 | 3.1% |
| Threonine THR (T) | 24 | 4.65% |
| Tryptophan TRP (W) | 8 | 1.55% |
| Valine VAL (V) | 36 | 6.98% |
| Tyrosine TYR (Y) | 22 | 4.26% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2589 |
| Hydrogen | H | 3972 |
| Nitrogen | N | 662 |
| Oxygen | O | 762 |
| Sulphur | S | 23 |
| Formula | C2589H3972N662O762S23 |
| Total Number of Atoms: | 8008 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 61 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 77280 Absorption 0.1% (=1 g/l) 1.349, assuming all pairs of CYS residues form cystines Ext. coefficient 76780 Absorption 0.1% (=1 g/l) 1.340, assuming all CYS residues are reduced |
| Aromaticity: | 0.112 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.20 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.72, 24.81, 26.74] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 87.8681 |
| Grand average of hydropathicity (GRAVY): | -0.08 |