Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4280 |
| Number of amino acids: | 538 |
| Molecular Weight: | 61163.71 Da |
| Theoretical pI: | 6 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 4.83% |
| Cysteine CYS (C) | 6 | 1.12% |
| Glutamic Acid GLU (E) | 48 | 8.92% |
| Aspartic Acid ASP (D) | 31 | 5.76% |
| Glycine GLY (G) | 40 | 7.43% |
| Phynylalanine PHE (F) | 25 | 4.65% |
| Isoleucine ILE (I) | 25 | 4.65% |
| Histidine HIS (H) | 9 | 1.67% |
| Lysine LYS (K) | 15 | 2.79% |
| Methionine MET (M) | 2 | 0.37% |
| Leucine LEU (L) | 39 | 7.25% |
| Asparagine ASN (N) | 27 | 5.02% |
| Glutamine GLN (Q) | 45 | 8.36% |
| Proline PRO (P) | 21 | 3.9% |
| Serine SER (S) | 52 | 9.67% |
| Arginine ARG (R) | 58 | 10.78% |
| Threonine THR (T) | 15 | 2.79% |
| Tryptophan TRP (W) | 5 | 0.93% |
| Valine VAL (V) | 41 | 7.62% |
| Tyrosine TYR (Y) | 8 | 1.49% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2637 |
| Hydrogen | H | 4184 |
| Nitrogen | N | 822 |
| Oxygen | O | 844 |
| Sulphur | S | 8 |
| Formula | C2637H4184N822O844S8 |
| Total Number of Atoms: | 8495 |
| Total number of positively charged residues (ARG + LYS): | 73 |
| Total number of negatively charged residues (ASP + GLU): | 79 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 39795 Absorption 0.1% (=1 g/l) 0.651, assuming all pairs of CYS residues form cystines Ext. coefficient 39420 Absorption 0.1% (=1 g/l) 0.644, assuming all CYS residues are reduced |
| Aromaticity: | 0.071 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 59.35 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.58, 26.02, 21.38] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.3271 |
| Grand average of hydropathicity (GRAVY): | -0.79 |