Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4274 |
| Number of amino acids: | 397 |
| Molecular Weight: | 42927.84 Da |
| Theoretical pI: | 5.73 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 8.56% |
| Cysteine CYS (C) | 11 | 2.77% |
| Glutamic Acid GLU (E) | 12 | 3.02% |
| Aspartic Acid ASP (D) | 28 | 7.05% |
| Glycine GLY (G) | 36 | 9.07% |
| Phynylalanine PHE (F) | 14 | 3.53% |
| Isoleucine ILE (I) | 29 | 7.3% |
| Histidine HIS (H) | 6 | 1.51% |
| Lysine LYS (K) | 20 | 5.04% |
| Methionine MET (M) | 9 | 2.27% |
| Leucine LEU (L) | 31 | 7.81% |
| Asparagine ASN (N) | 28 | 7.05% |
| Glutamine GLN (Q) | 17 | 4.28% |
| Proline PRO (P) | 16 | 4.03% |
| Serine SER (S) | 25 | 6.3% |
| Arginine ARG (R) | 15 | 3.78% |
| Threonine THR (T) | 23 | 5.79% |
| Tryptophan TRP (W) | 8 | 2.02% |
| Valine VAL (V) | 29 | 7.3% |
| Tyrosine TYR (Y) | 6 | 1.51% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1887 |
| Hydrogen | H | 2985 |
| Nitrogen | N | 527 |
| Oxygen | O | 577 |
| Sulphur | S | 20 |
| Formula | C1887H2985N527O577S20 |
| Total Number of Atoms: | 5996 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 40 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 53565 Absorption 0.1% (=1 g/l) 1.248, assuming all pairs of CYS residues form cystines Ext. coefficient 52940 Absorption 0.1% (=1 g/l) 1.233, assuming all CYS residues are reduced |
| Aromaticity: | 0.071 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.64 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.47, 26.45, 21.66] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 88.6902 |
| Grand average of hydropathicity (GRAVY): | -0.10 |