Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4260 |
| Number of amino acids: | 417 |
| Molecular Weight: | 46727.7 Da |
| Theoretical pI: | 8.89 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 7.91% |
| Cysteine CYS (C) | 10 | 2.4% |
| Glutamic Acid GLU (E) | 14 | 3.36% |
| Aspartic Acid ASP (D) | 22 | 5.28% |
| Glycine GLY (G) | 36 | 8.63% |
| Phynylalanine PHE (F) | 16 | 3.84% |
| Isoleucine ILE (I) | 30 | 7.19% |
| Histidine HIS (H) | 19 | 4.56% |
| Lysine LYS (K) | 9 | 2.16% |
| Methionine MET (M) | 13 | 3.12% |
| Leucine LEU (L) | 22 | 5.28% |
| Asparagine ASN (N) | 29 | 6.95% |
| Glutamine GLN (Q) | 9 | 2.16% |
| Proline PRO (P) | 12 | 2.88% |
| Serine SER (S) | 34 | 8.15% |
| Arginine ARG (R) | 34 | 8.15% |
| Threonine THR (T) | 24 | 5.76% |
| Tryptophan TRP (W) | 11 | 2.64% |
| Valine VAL (V) | 26 | 6.24% |
| Tyrosine TYR (Y) | 14 | 3.36% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2048 |
| Hydrogen | H | 3153 |
| Nitrogen | N | 615 |
| Oxygen | O | 600 |
| Sulphur | S | 23 |
| Formula | C2048H3153N615O600S23 |
| Total Number of Atoms: | 6439 |
| Total number of positively charged residues (ARG + LYS): | 43 |
| Total number of negatively charged residues (ASP + GLU): | 36 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 81985 Absorption 0.1% (=1 g/l) 1.755, assuming all pairs of CYS residues form cystines Ext. coefficient 81360 Absorption 0.1% (=1 g/l) 1.741, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 42.68 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.54, 26.62, 19.66] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.6283 |
| Grand average of hydropathicity (GRAVY): | -0.32 |