Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4253 |
| Number of amino acids: | 629 |
| Molecular Weight: | 68664.25 Da |
| Theoretical pI: | 8.32 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 78 | 12.4% |
| Cysteine CYS (C) | 6 | 0.95% |
| Glutamic Acid GLU (E) | 28 | 4.45% |
| Aspartic Acid ASP (D) | 30 | 4.77% |
| Glycine GLY (G) | 69 | 10.97% |
| Phynylalanine PHE (F) | 25 | 3.97% |
| Isoleucine ILE (I) | 14 | 2.23% |
| Histidine HIS (H) | 12 | 1.91% |
| Lysine LYS (K) | 20 | 3.18% |
| Methionine MET (M) | 13 | 2.07% |
| Leucine LEU (L) | 51 | 8.11% |
| Asparagine ASN (N) | 24 | 3.82% |
| Glutamine GLN (Q) | 23 | 3.66% |
| Proline PRO (P) | 28 | 4.45% |
| Serine SER (S) | 40 | 6.36% |
| Arginine ARG (R) | 41 | 6.52% |
| Threonine THR (T) | 30 | 4.77% |
| Tryptophan TRP (W) | 14 | 2.23% |
| Valine VAL (V) | 46 | 7.31% |
| Tyrosine TYR (Y) | 37 | 5.88% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3076 |
| Hydrogen | H | 4669 |
| Nitrogen | N | 857 |
| Oxygen | O | 900 |
| Sulphur | S | 19 |
| Formula | C3076H4669N857O900S19 |
| Total Number of Atoms: | 9521 |
| Total number of positively charged residues (ARG + LYS): | 61 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 132505 Absorption 0.1% (=1 g/l) 1.930, assuming all pairs of CYS residues form cystines Ext. coefficient 132130 Absorption 0.1% (=1 g/l) 1.924, assuming all CYS residues are reduced |
| Aromaticity: | 0.121 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.39 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.73, 25.60, 27.03] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.911 |
| Grand average of hydropathicity (GRAVY): | -0.24 |