Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4214 |
| Number of amino acids: | 396 |
| Molecular Weight: | 42709.2 Da |
| Theoretical pI: | 5.59 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 8.59% |
| Cysteine CYS (C) | 9 | 2.27% |
| Glutamic Acid GLU (E) | 18 | 4.55% |
| Aspartic Acid ASP (D) | 28 | 7.07% |
| Glycine GLY (G) | 40 | 10.1% |
| Phynylalanine PHE (F) | 14 | 3.54% |
| Isoleucine ILE (I) | 25 | 6.31% |
| Histidine HIS (H) | 7 | 1.77% |
| Lysine LYS (K) | 19 | 4.8% |
| Methionine MET (M) | 8 | 2.02% |
| Leucine LEU (L) | 30 | 7.58% |
| Asparagine ASN (N) | 25 | 6.31% |
| Glutamine GLN (Q) | 12 | 3.03% |
| Proline PRO (P) | 16 | 4.04% |
| Serine SER (S) | 28 | 7.07% |
| Arginine ARG (R) | 20 | 5.05% |
| Threonine THR (T) | 22 | 5.56% |
| Tryptophan TRP (W) | 7 | 1.77% |
| Valine VAL (V) | 28 | 7.07% |
| Tyrosine TYR (Y) | 6 | 1.52% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1866 |
| Hydrogen | H | 2951 |
| Nitrogen | N | 533 |
| Oxygen | O | 582 |
| Sulphur | S | 17 |
| Formula | C1866H2951N533O582S17 |
| Total Number of Atoms: | 5949 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 46 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 47940 Absorption 0.1% (=1 g/l) 1.122, assuming all pairs of CYS residues form cystines Ext. coefficient 47440 Absorption 0.1% (=1 g/l) 1.111, assuming all CYS residues are reduced |
| Aromaticity: | 0.068 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.44 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.78, 27.53, 22.73] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.2576 |
| Grand average of hydropathicity (GRAVY): | -0.22 |