Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4185 |
| Number of amino acids: | 398 |
| Molecular Weight: | 43274.2 Da |
| Theoretical pI: | 9.06 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 7.79% |
| Cysteine CYS (C) | 8 | 2.01% |
| Glutamic Acid GLU (E) | 20 | 5.03% |
| Aspartic Acid ASP (D) | 21 | 5.28% |
| Glycine GLY (G) | 32 | 8.04% |
| Phynylalanine PHE (F) | 17 | 4.27% |
| Isoleucine ILE (I) | 11 | 2.76% |
| Histidine HIS (H) | 9 | 2.26% |
| Lysine LYS (K) | 13 | 3.27% |
| Methionine MET (M) | 5 | 1.26% |
| Leucine LEU (L) | 35 | 8.79% |
| Asparagine ASN (N) | 12 | 3.02% |
| Glutamine GLN (Q) | 9 | 2.26% |
| Proline PRO (P) | 27 | 6.78% |
| Serine SER (S) | 41 | 10.3% |
| Arginine ARG (R) | 35 | 8.79% |
| Threonine THR (T) | 21 | 5.28% |
| Tryptophan TRP (W) | 6 | 1.51% |
| Valine VAL (V) | 41 | 10.3% |
| Tyrosine TYR (Y) | 4 | 1.01% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1903 |
| Hydrogen | H | 3031 |
| Nitrogen | N | 561 |
| Oxygen | O | 568 |
| Sulphur | S | 13 |
| Formula | C1903H3031N561O568S13 |
| Total Number of Atoms: | 6076 |
| Total number of positively charged residues (ARG + LYS): | 48 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 39460 Absorption 0.1% (=1 g/l) 0.912, assuming all pairs of CYS residues form cystines Ext. coefficient 38960 Absorption 0.1% (=1 g/l) 0.900, assuming all CYS residues are reduced |
| Aromaticity: | 0.068 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 54.10 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.64, 28.14, 22.86] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.7387 |
| Grand average of hydropathicity (GRAVY): | -0.20 |