Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4179 |
| Number of amino acids: | 458 |
| Molecular Weight: | 51106.88 Da |
| Theoretical pI: | 9.06 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 6.77% |
| Cysteine CYS (C) | 20 | 4.37% |
| Glutamic Acid GLU (E) | 9 | 1.97% |
| Aspartic Acid ASP (D) | 17 | 3.71% |
| Glycine GLY (G) | 33 | 7.21% |
| Phynylalanine PHE (F) | 22 | 4.8% |
| Isoleucine ILE (I) | 16 | 3.49% |
| Histidine HIS (H) | 10 | 2.18% |
| Lysine LYS (K) | 24 | 5.24% |
| Methionine MET (M) | 11 | 2.4% |
| Leucine LEU (L) | 35 | 7.64% |
| Asparagine ASN (N) | 30 | 6.55% |
| Glutamine GLN (Q) | 17 | 3.71% |
| Proline PRO (P) | 33 | 7.21% |
| Serine SER (S) | 30 | 6.55% |
| Arginine ARG (R) | 18 | 3.93% |
| Threonine THR (T) | 29 | 6.33% |
| Tryptophan TRP (W) | 15 | 3.28% |
| Valine VAL (V) | 39 | 8.52% |
| Tyrosine TYR (Y) | 19 | 4.15% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2310 |
| Hydrogen | H | 3508 |
| Nitrogen | N | 618 |
| Oxygen | O | 636 |
| Sulphur | S | 31 |
| Formula | C2310H3508N618O636S31 |
| Total Number of Atoms: | 7103 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 26 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 112060 Absorption 0.1% (=1 g/l) 2.193, assuming all pairs of CYS residues form cystines Ext. coefficient 110810 Absorption 0.1% (=1 g/l) 2.168, assuming all CYS residues are reduced |
| Aromaticity: | 0.122 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 31.35 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.88, 27.51, 18.78] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.8908 |
| Grand average of hydropathicity (GRAVY): | -0.12 |