Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4160 |
| Number of amino acids: | 353 |
| Molecular Weight: | 38899.44 Da |
| Theoretical pI: | 6.21 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 15 | 4.25% |
| Cysteine CYS (C) | 5 | 1.42% |
| Glutamic Acid GLU (E) | 10 | 2.83% |
| Aspartic Acid ASP (D) | 18 | 5.1% |
| Glycine GLY (G) | 12 | 3.4% |
| Phynylalanine PHE (F) | 19 | 5.38% |
| Isoleucine ILE (I) | 26 | 7.37% |
| Histidine HIS (H) | 21 | 5.95% |
| Lysine LYS (K) | 10 | 2.83% |
| Methionine MET (M) | 8 | 2.27% |
| Leucine LEU (L) | 42 | 11.9% |
| Asparagine ASN (N) | 19 | 5.38% |
| Glutamine GLN (Q) | 10 | 2.83% |
| Proline PRO (P) | 23 | 6.52% |
| Serine SER (S) | 47 | 13.31% |
| Arginine ARG (R) | 10 | 2.83% |
| Threonine THR (T) | 28 | 7.93% |
| Tryptophan TRP (W) | 1 | 0.28% |
| Valine VAL (V) | 24 | 6.8% |
| Tyrosine TYR (Y) | 5 | 1.42% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1741 |
| Hydrogen | H | 2733 |
| Nitrogen | N | 465 |
| Oxygen | O | 519 |
| Sulphur | S | 13 |
| Formula | C1741H2733N465O519S13 |
| Total Number of Atoms: | 5471 |
| Total number of positively charged residues (ARG + LYS): | 20 |
| Total number of negatively charged residues (ASP + GLU): | 28 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 13200 Absorption 0.1% (=1 g/l) 0.339, assuming all pairs of CYS residues form cystines Ext. coefficient 12950 Absorption 0.1% (=1 g/l) 0.333, assuming all CYS residues are reduced |
| Aromaticity: | 0.071 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 51.79 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.14, 28.61, 21.25] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 99.0934 |
| Grand average of hydropathicity (GRAVY): | 0.08 |